Detailed information of SNP:
|
SNP ID:
sf0725507863(Gbrowse)
Chromosome: chr07 Position: 25507863 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 60.07% | 39.93% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 493 | 4.46% | 95.54% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 332 | 6.33% | 93.67% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725507863 | A->G | LOC_Os07g42620(LOC_Os07g42620.1) | INTRON |