Detailed information of SNP:
|
SNP ID:
sf0725524450(Gbrowse)
Chromosome: chr07 Position: 25524450 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 95.50% | 4.50% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 480 | 87.50% | 12.50% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 87 | 47.13% | 52.87% |
| Japonica Intermediate | 61 | 83.61% | 16.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725524450 | T->C | LOC_Os07g42632(LOC_Os07g42632.1) | Synonymous |
| sf0725524450 | T->C | LOC_Os07g42632(LOC_Os07g42632.3) | Synonymous |
| sf0725524450 | T->C | LOC_Os07g42632(LOC_Os07g42632.2) | Synonymous |