Detailed information of SNP:
|
SNP ID:
sf0725553567(Gbrowse)
Chromosome: chr07 Position: 25553567 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.16% | 41.84% |
| All Indica | 795 | 92.20% | 7.80% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725553567 | A->G | LOC_Os07g42680(LOC_Os07g42680.1) | Non-Synonymous SNP |