Detailed information of SNP:
|
SNP ID:
sf0725626262(Gbrowse)
Chromosome: chr07 Position: 25626262 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 84.21% | 15.79% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 423 | 54.37% | 45.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 287 | 74.56% | 25.44% |
| Tropical Japonica | 78 | 2.56% | 97.44% |
| Japonica Intermediate | 58 | 24.14% | 75.86% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725626262 | C->T | INTERGENIC | None |