Detailed information of SNP:
|
SNP ID:
sf0725673590(Gbrowse)
Chromosome: chr07 Position: 25673590 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1290 | 82.71% | 17.29% |
| All Indica | 798 | 97.99% | 2.01% |
| All Japonica | 374 | 47.86% | 52.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 252 | 65.48% | 34.52% |
| Tropical Japonica | 71 | 1.41% | 98.59% |
| Japonica Intermediate | 51 | 25.49% | 74.51% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725673590 | A->G | INTERGENIC | None |