Detailed information of SNP:
|
SNP ID:
sf0725708829(Gbrowse)
Chromosome: chr07 Position: 25708829 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725708829 | T->C | INTERGENIC | None |