Detailed information of SNP:
|
SNP ID:
sf0725741676(Gbrowse)
Chromosome: chr07 Position: 25741676 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1185 | 75.53% | 24.47% |
| All Indica | 789 | 96.83% | 3.17% |
| All Japonica | 284 | 35.21% | 64.79% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 180 | 48.89% | 51.11% |
| Tropical Japonica | 61 | 6.56% | 93.44% |
| Japonica Intermediate | 43 | 18.60% | 81.40% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725741676 | T->C | LOC_Os07g42970(LOC_Os07g42970.1) | INTRON |