Detailed information of SNP:
|
SNP ID:
sf0725802064(Gbrowse)
Chromosome: chr07 Position: 25802064 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.18% | 44.82% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725802064 | C->T | INTERGENIC | None |