Detailed information of SNP:
|
SNP ID:
sf0725832083(Gbrowse)
Chromosome: chr07 Position: 25832083 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1305 | 89.43% | 10.57% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 390 | 69.23% | 30.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 252 | 55.56% | 44.44% |
| Tropical Japonica | 84 | 98.81% | 1.19% |
| Japonica Intermediate | 54 | 87.04% | 12.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725832083 | A->C | INTERGENIC | None |