Detailed information of SNP:
|
SNP ID:
sf0725839540(Gbrowse)
Chromosome: chr07 Position: 25839540 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 96.73% | 3.27% |
| All Indica | 768 | 95.70% | 4.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 84.21% | 15.79% |
| Indica I | 362 | 96.13% | 3.87% |
| Indica II | 199 | 92.46% | 7.54% |
| Indica Intermediate | 207 | 98.07% | 1.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725839540 | C->A | LOC_Os07g43120(LOC_Os07g43120.1) | INTRON |