Detailed information of SNP:
|
SNP ID:
sf0725883674(Gbrowse)
Chromosome: chr07 Position: 25883674 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1311 | 97.56% | 2.44% |
| All Indica | 715 | 95.94% | 4.06% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 46 | 95.65% | 4.35% |
| Indica I | 310 | 96.13% | 3.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 193 | 95.34% | 4.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725883674 | G->C | LOC_Os07g43180(LOC_Os07g43180.1) | Non-Synonymous SNP |