Detailed information of SNP:
|
SNP ID:
sf0725886436(Gbrowse)
Chromosome: chr07 Position: 25886436 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.81% | 49.19% |
| All Indica | 798 | 16.54% | 83.46% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 25.07% | 74.93% |
| Indica II | 213 | 5.16% | 94.84% |
| Indica Intermediate | 210 | 12.86% | 87.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725886436 | C->T | INTERGENIC | None |