Detailed information of SNP:
|
SNP ID:
sf0725922035(Gbrowse)
Chromosome: chr07 Position: 25922035 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.17% | 46.83% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725922035 | C->T | INTERGENIC | None |