Detailed information of SNP:
|
SNP ID:
sf0725922100(Gbrowse)
Chromosome: chr07 Position: 25922100 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.21% | 43.79% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725922100 | T->G | INTERGENIC | None |