Detailed information of SNP:
|
SNP ID:
sf0725956546(Gbrowse)
Chromosome: chr07 Position: 25956546 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.45% | 27.55% |
| All Indica | 799 | 57.82% | 42.18% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 43.73% | 56.27% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725956546 | T->C | INTERGENIC | None |