Detailed information of SNP:
|
SNP ID:
sf0725963484(Gbrowse)
Chromosome: chr07 Position: 25963484 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725963484 | T->C | INTERGENIC | None |