Detailed information of SNP:
|
SNP ID:
sf0725994248(Gbrowse)
Chromosome: chr07 Position: 25994248 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.37% | 24.63% |
| All Indica | 797 | 58.85% | 41.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 77.60% | 22.40% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0725994248 | G->A | INTERGENIC | None |