Detailed information of SNP:
|
SNP ID:
sf0726030893(Gbrowse)
Chromosome: chr07 Position: 26030893 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 72.30% | 27.70% |
| All Indica | 735 | 51.84% | 48.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 349 | 66.76% | 33.24% |
| Indica II | 207 | 21.26% | 78.74% |
| Indica Intermediate | 179 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726030893 | A->G | INTERGENIC | None |