Detailed information of SNP:
|
SNP ID:
sf0726031760(Gbrowse)
Chromosome: chr07 Position: 26031760 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.41% | 40.59% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726031760 | C->T | INTERGENIC | None |