Detailed information of SNP:
|
SNP ID:
sf0726049174(Gbrowse)
Chromosome: chr07 Position: 26049174 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1312 | 83.84% | 16.16% |
| All Indica | 694 | 70.75% | 29.25% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 320 | 60.00% | 40.00% |
| Indica II | 200 | 91.00% | 9.00% |
| Indica Intermediate | 174 | 67.24% | 32.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726049174 | A->G | INTERGENIC | None |