Detailed information of SNP:
|
SNP ID:
sf0726064539(Gbrowse)
Chromosome: chr07 Position: 26064539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 68.79% | 31.21% |
| All Indica | 794 | 48.11% | 51.89% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 371 | 61.19% | 38.81% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726064539 | C->T | INTERGENIC | None |