Detailed information of SNP:
|
SNP ID:
sf0726107454(Gbrowse)
Chromosome: chr07 Position: 26107454 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.83% | 9.17% |
| All Indica | 798 | 85.84% | 14.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726107454 | C->A | LOC_Os07g43610(LOC_Os07g43610.1) | INTRON |