Detailed information of SNP:



SNP ID: sf0726118233(Gbrowse)

Chromosome: chr07

Position: 26118233
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1369 95.33% 4.67%
All Indica752 92.42% 7.58%
All Japonica497 99.80% 0.20%
Aus65 93.85% 6.15%
Indica I343 94.75% 5.25%
Indica II206 84.95% 15.05%
Indica Intermediate203 96.06% 3.94%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0726118233 C->T LOC_Os07g43630(LOC_Os07g43630.1) Synonymous