Detailed information of SNP:
SNP ID:
sf0726118233(Gbrowse)
Chromosome: chr07 Position: 26118233 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1369 | 95.33% | 4.67% |
All Indica | 752 | 92.42% | 7.58% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 65 | 93.85% | 6.15% |
Indica I | 343 | 94.75% | 5.25% |
Indica II | 206 | 84.95% | 15.05% |
Indica Intermediate | 203 | 96.06% | 3.94% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 98.94% | 1.06% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0726118233 | C->T | LOC_Os07g43630(LOC_Os07g43630.1) | Synonymous |