Detailed information of SNP:
|
SNP ID:
sf0726126296(Gbrowse)
Chromosome: chr07 Position: 26126296 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 55.70% | 44.30% |
| All Indica | 796 | 23.87% | 76.13% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 21.98% | 78.02% |
| Indica II | 213 | 14.08% | 85.92% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726126296 | G->A | LOC_Os07g43640(LOC_Os07g43640.1) | INTRON |