Detailed information of SNP:
|
SNP ID:
sf0726130775(Gbrowse)
Chromosome: chr07 Position: 26130775 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.25% | 3.75% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726130775 | C->T | INTERGENIC | None |