Detailed information of SNP:
|
SNP ID:
sf0726139080(Gbrowse)
Chromosome: chr07 Position: 26139080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 95.48% | 4.52% |
| All Indica | 782 | 94.12% | 5.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 71.67% | 28.33% |
| Indica I | 370 | 98.92% | 1.08% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726139080 | C->T | LOC_Os07g43660(LOC_Os07g43660.1) | Non-Synonymous SNP |