Detailed information of SNP:
|
SNP ID:
sf0726171837(Gbrowse)
Chromosome: chr07 Position: 26171837 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.01% | 40.99% |
| All Indica | 796 | 95.98% | 4.02% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726171837 | C->T | INTERGENIC | None |