Detailed information of SNP:
|
SNP ID:
sf0726173764(Gbrowse)
Chromosome: chr07 Position: 26173764 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 96.53% | 3.47% |
| All Indica | 794 | 95.34% | 4.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726173764 | T->C | INTERGENIC | None |