Detailed information of SNP:
|
SNP ID:
sf0726186844(Gbrowse)
Chromosome: chr07 Position: 26186844 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726186844 | T->A | INTERGENIC | None |