Detailed information of SNP:
|
SNP ID:
sf0726194900(Gbrowse)
Chromosome: chr07 Position: 26194900 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 96.17% | 3.83% |
| All Indica | 792 | 94.70% | 5.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 206 | 88.83% | 11.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726194900 | C->T | INTERGENIC | None |