Detailed information of SNP:
|
SNP ID:
sf0726204363(Gbrowse)
Chromosome: chr07 Position: 26204363 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 94.00% | 6.00% |
| All Indica | 796 | 92.96% | 7.04% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726204363 | T->C | INTERGENIC | None |