Detailed information of SNP:
|
SNP ID:
sf0726229017(Gbrowse)
Chromosome: chr07 Position: 26229017 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 53.86% | 46.14% |
| All Indica | 792 | 89.27% | 10.73% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726229017 | C->T | INTERGENIC | None |