Detailed information of SNP:
|
SNP ID:
sf0726231865(Gbrowse)
Chromosome: chr07 Position: 26231865 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 97.46% | 2.54% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726231865 | C->G | LOC_Os07g43870(LOC_Os07g43870.2) | INTRON |
| sf0726231865 | C->G | LOC_Os07g43870(LOC_Os07g43870.1) | INTRON |
| sf0726231865 | C->G | LOC_Os07g43870(LOC_Os07g43870.3) | INTRON |