Detailed information of SNP:
|
SNP ID:
sf0726252903(Gbrowse)
Chromosome: chr07 Position: 26252903 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.79% | 40.21% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726252903 | A->G | INTERGENIC | None |