Detailed information of SNP:
|
SNP ID:
sf0726256984(Gbrowse)
Chromosome: chr07 Position: 26256984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 91.45% | 8.55% |
| All Indica | 739 | 86.47% | 13.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 341 | 86.22% | 13.78% |
| Indica II | 198 | 86.36% | 13.64% |
| Indica Intermediate | 200 | 87.00% | 13.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726256984 | C->T | LOC_Os07g43925(LOC_Os07g43925.1) | INTRON |