Detailed information of SNP:
|
SNP ID:
sf0726268104(Gbrowse)
Chromosome: chr07 Position: 26268104 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 57.72% | 42.28% |
| All Indica | 728 | 96.29% | 3.71% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 34 | 52.94% | 47.06% |
| Indica I | 359 | 94.15% | 5.85% |
| Indica II | 200 | 98.50% | 1.50% |
| Indica Intermediate | 169 | 98.22% | 1.78% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 36.11% | 63.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726268104 | T->C | INTERGENIC | None |