Detailed information of SNP:
|
SNP ID:
sf0726273868(Gbrowse)
Chromosome: chr07 Position: 26273868 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 80.38% | 19.62% |
| All Indica | 795 | 98.24% | 1.76% |
| All Japonica | 495 | 54.55% | 45.45% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 333 | 73.87% | 26.13% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726273868 | A->T | INTERGENIC | None |