Detailed information of SNP:
|
SNP ID:
sf0726299925(Gbrowse)
Chromosome: chr07 Position: 26299925 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.02% | 37.98% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726299925 | T->C | INTERGENIC | None |