Detailed information of SNP:
|
SNP ID:
sf0726311276(Gbrowse)
Chromosome: chr07 Position: 26311276 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 86.18% | 13.82% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 484 | 63.84% | 36.16% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 82.30% | 17.70% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726311276 | C->G | INTERGENIC | None |