Detailed information of SNP:
|
SNP ID:
sf0726325136(Gbrowse)
Chromosome: chr07 Position: 26325136 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 11.34% | 88.66% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726325136 | T->G | LOC_Os07g44050(LOC_Os07g44050.1) | INTRON |
| sf0726325136 | T->G | LOC_Os07g44050(LOC_Os07g44050.2) | INTRON |