Detailed information of SNP:
|
SNP ID:
sf0726336290(Gbrowse)
Chromosome: chr07 Position: 26336290 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.45% | 43.55% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726336290 | C->T | INTERGENIC | None |