Detailed information of SNP:
|
SNP ID:
sf0726353667(Gbrowse)
Chromosome: chr07 Position: 26353667 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.14% | 38.86% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726353667 | G->A | INTERGENIC | None |