Detailed information of SNP:
|
SNP ID:
sf0726368747(Gbrowse)
Chromosome: chr07 Position: 26368747 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.13% | 19.87% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 72.64% | 27.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 74.40% | 25.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726368747 | C->T | INTERGENIC | None |