Detailed information of SNP:
|
SNP ID:
sf0726371331(Gbrowse)
Chromosome: chr07 Position: 26371331 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.74% | 13.26% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 496 | 73.99% | 26.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726371331 | C->G | LOC_Os07g44120(LOC_Os07g44120.1) | INTRON |