Detailed information of SNP:
|
SNP ID:
sf0726377575(Gbrowse)
Chromosome: chr07 Position: 26377575 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 96.43% | 3.57% |
| All Indica | 794 | 98.24% | 1.76% |
| All Japonica | 484 | 93.18% | 6.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 65.91% | 34.09% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726377575 | G->A | INTERGENIC | None |