Detailed information of SNP:
|
SNP ID:
sf0726379555(Gbrowse)
Chromosome: chr07 Position: 26379555 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 87.50% | 12.50% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 491 | 74.34% | 25.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 333 | 91.59% | 8.41% |
| Tropical Japonica | 90 | 20.00% | 80.00% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726379555 | G->A | INTERGENIC | None |