Detailed information of SNP:
|
SNP ID:
sf0726398994(Gbrowse)
Chromosome: chr07 Position: 26398994 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1266 | 66.90% | 33.10% |
| All Indica | 761 | 96.06% | 3.94% |
| All Japonica | 394 | 4.57% | 95.43% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 344 | 97.09% | 2.91% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 317 | 2.52% | 97.48% |
| Tropical Japonica | 31 | 22.58% | 77.42% |
| Japonica Intermediate | 46 | 6.52% | 93.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 32 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726398994 | A->T | INTERGENIC | None |