Detailed information of SNP:
|
SNP ID:
sf0726425722(Gbrowse)
Chromosome: chr07 Position: 26425722 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.54% | 43.46% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726425722 | A->G | LOC_Os07g44210(LOC_Os07g44210.1) | INTRON |