Detailed information of SNP:
|
SNP ID:
sf0726434470(Gbrowse)
Chromosome: chr07 Position: 26434470 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.36% | 16.64% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 496 | 69.56% | 30.44% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726434470 | A->T | INTERGENIC | None |