Detailed information of SNP:
|
SNP ID:
sf0726450334(Gbrowse)
Chromosome: chr07 Position: 26450334 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1381 | 78.57% | 21.43% |
| All Indica | 764 | 63.74% | 36.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 352 | 45.45% | 54.55% |
| Indica II | 207 | 85.51% | 14.49% |
| Indica Intermediate | 205 | 73.17% | 26.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0726450334 | T->C | INTERGENIC | None |